Scaffold Ga0181406_1009920

Overview

Basic Information

• Taxon OID: 3300017767
• Scaffold ID: Ga0181406_1009920
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3105
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018738	Metagenome / Metatranscriptome	233	Y
F019665	Metagenome / Metatranscriptome	228	Y
F021511	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181406_10099201	F021511	N/A	IQVKTLMHDHDEKNFVHHQTTKEIVDFYAEHNEDIHHWLLDDENAFEYYYQAMGAYNLAQAKCTSEKERFQVQNAYLKDVVYIFIATIAYDLAASHDMLDMSMEDVENYQLAKELQHAKTKLTVIDGGKK
Ga0181406_10099202	F019665	GGAGG	MPFNTYIDDKDMIPVLLSYDWIITHNTWTDCPYPTYAAIKKAYQHNGNATIFGEMM
Ga0181406_10099208	F018738	N/A	MTPPLYRYYCCDSTDGRHFCFMASDDMEAAYRADSMCKEWYNTTLKDVYLDKHNNPNRRYKPNDKEILSQQL