Scaffold Ga0181406_1004153

Overview

Basic Information

• Taxon OID: 3300017767
• Scaffold ID: Ga0181406_1004153
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4905
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070929	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181406_10041531	F070929	N/A	VAGASVSGIVITKNLFRSSPLHAKERNRFNLYIGDLEKENKKLRGAVNRAKQPLTIKEYDEENPMGAISELISGLAPILPSSVRPFLNNPAVIKGAEKLLQEHPEEIKNVLSKLVNKKPNAKDQPQTVQESIDSMSV
Ga0181406_100415315	F070929	GAGG	MIETILNEIIILFAVAGASVSGIVITKNLFRSSPLHAKERNRFNLYIGDLEKENKKLRGAVNRAKAPLTIKEFDEENPMGAISELISGLAPILPASVRPFLNNPSVIKGAEKLLQEHPEEIKNVLSKLVNKKPNAKQEP