Scaffold Ga0181343_1062325

Overview

Basic Information

• Taxon OID: 3300017766
• Scaffold ID: Ga0181343_1062325
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1084
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050322	Metagenome	145	Y
F091915	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181343_10623252	F091915	GGAG	MNFALMIYTVVAMSGQNANLTPAHDWRPLTTHYTLESCLNAAKIMGISSERFRCVPSK
Ga0181343_10623254	F050322	N/A	MNEYDWQERGTAYYYYDTDTGKIVGMVSKIMSNEIWIGVVYTGKYSFTLDDQCHLGQYIDLESVKDAVEHFWAIQNRTLIGK