Scaffold Ga0181343_1007185

Overview

Basic Information

• Taxon OID: 3300017766
• Scaffold ID: Ga0181343_1007185
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3724
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026552	Metagenome	197	N
F036695	Metagenome	169	N
F086794	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181343_10071852	F036695	N/A	MEMTSSDKAILGLLNNSKIIPPNDIIQKYTVASHNDVELLVIKVILNIDINDKGQRGDGERMLYENNFDAYKLSETILKKILRPLGLLKKISWGVLIVIDASGNRIIEHSMIKN
Ga0181343_10071853	F086794	N/A	MKIGKLILQESEKKQIREMYGLVTEQTKSPEDNQEFLDWVKNATVMPFIAPNPYSNGDLKLGVQIKSNDGKTISAMDLKNPNQSQVINLIERLDVTTEDGKLVYRFGTENGQLFNSSTFKANYDVIDNSYVVYSIVDENSNMIQRLKQFTKPGKINKFIVTVTPRLSSDLLKTGSKLFTTKPNVLIVQ
Ga0181343_10071857	F026552	N/A	MELTNVIEKLLNRDSFLNLLENDIIEKFEVSVSPYESKILVIKMFLNITKDEFLGTGESTPRLSEWEVRGKLWEDYNLDSAWWHAHIIPNRILKPLVGKDYFIKIILFVVDKNGIHLFTE