Scaffold Ga0181343_1006489

Overview

Basic Information

• Taxon OID: 3300017766
• Scaffold ID: Ga0181343_1006489
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3959
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025459	Metagenome	201	N
F034182	Metagenome / Metatranscriptome	175	Y
F048162	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181343_10064893	F034182	AGGCGG	MNGHTFHSLVGTSAPAAAVLISFSEVEAWLRIASLILGICIGAVSLYKMLKAKKS
Ga0181343_10064897	F048162	N/A	LKKKRQPTVESERTEALAEAKRLLSEHYDCGFTIVSWEQGGETMHGEFVFGNRYAVEGLAGDSFSILFPDTEEEEEDEEA
Ga0181343_10064898	F025459	AGGAGG	MKLILEFDETERYEHEVACKGLDILILVDDIDQELRSALKHECGAFAKMDEDTMEAVRAWIWEERTKRNIPELI