Scaffold Ga0181343_1000533

Overview

Basic Information

• Taxon OID: 3300017766
• Scaffold ID: Ga0181343_1000533
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16537
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (31.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F003583	Metagenome / Metatranscriptome	478	Y
F029754	Metagenome / Metatranscriptome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181343_100053311	F000957	AGGAGG	MSSFRHLDGMLGLLSELYHINERIMTGDICSAKTAIQSDRMKKLLNHYHEALSEDGACKISLQAYAAAGGWVGITYSYEVDGFEIAGSQVPRRV
Ga0181343_100053318	F003583	N/A	MGKAKPAKQSGSDNLLLAVALITAFAGVSAFSSAYIAGYVLDQLQSTDALVMIVTDGGKLRSDSADLERNMSTATLALKSVRDLGWALAVGCLGVGVAVFLRSRRQTA
Ga0181343_100053325	F029754	N/A	MSCNTVTFKRGSSFSASMVWNPEPGGIANLIGVTVTSTIIDAQQNEYDLTATVAVDGLSVAFVYPGSTSAWAIGTAKWDIKFLNGGTVFYSETMRIDLIGQVTA