Scaffold Ga0181343_1000264

Overview

Basic Information

• Taxon OID: 3300017766
• Scaffold ID: Ga0181343_1000264
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25020
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005388	Metagenome / Metatranscriptome	402	N
F009134	Metagenome	322	Y
F012111	Metagenome	283	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181343_100026430	F005388	N/A	MTLRIGSGWIISHRVVDGWPTTTQITSVYIFHLMSCPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGENGGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRTWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPIFPLYIGLEASQRIAQNNPAFREDLRQADMGSGSGAELLKRIGANRVIKNFRHVPNLFPPRFTYAGGKYTLVQPFTSSSGTKGTVFSVNPNWVTAPFEAAFIVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFIHASEPVFTNQGMTIIFRRCTGALTQIICS
Ga0181343_100026432	F009134	N/A	MRNTVSSKETVSLESLSVLVRSKLAADAASTLERIEGYSLDGIKDESTREQILGSVAKRSALVFGWSEQGEAASVSINLLGSMPDKFHVEQVVSEPPDK
Ga0181343_10002648	F012111	AGG	MSERAPRRYTDGTVTFEGGIDAGVMPSEVDKNQVAFAVNANFRQGFVSCRPGFVQKNYDLCVTITADNDQVTADQTNVTADGWSEDCYGPQSISGTFQCALPYIADDGRTFILMLISGEVWFYDVAQNKAQNLSVSDDLKNPSNLLDGWMVQAENFVVIQDGFSRPLIFNGTNLRRAADDEIKCGKVMAYVNGRIWYALPNGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDVWKNLNYPIQAISLLTSGALGARSAITINGDVFYRAVDGVRSFIIARRSFTDWGNTPISSEMLNVIENDQTNLLWAGSAVVFDNRLLMTCQPRYNAEGVIHKAMAVLDFDLITSMRKKFPPAWSGIWTGLDALQIVKTENAYGDQCFCIARGSDDSIQIWEITKGEKFDNNVAEGKKEIEWLVQSRAYNFEVPFGLKRLDSGDLFIDQLEGDVSFDVTYRPDQYPGWIEWIDFSECATTTQCLDLCPITNFKPQYRPKMRFPTPSDAPCNQTISTPARNLYEVQVMLNIIGYCRIKSLRVHAYDVQEPSVGECRTVYPACTPLDVCDINPLTYTSEAVNP