Scaffold Ga0181343_1000156

Overview

Basic Information

• Taxon OID: 3300017766
• Scaffold ID: Ga0181343_1000156
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32995
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (76.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F006785	Metagenome / Metatranscriptome	364	Y
F009141	Metagenome / Metatranscriptome	322	Y
F021513	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181343_100015626	F006785	GGAGG	VSGGEWTTKGRQRESREAEREQLRLEKRHLRDLRWAVERSTLEASDWADLLALQAAHGKEGPLQVWRELVPYWRACQQLNGGADIPAELFPQATGLFPRTPEPVKAPANRAKATPGAPRKRRSDAGKRQAARKEAA
Ga0181343_100015632	F001841	GGA	MGHFTPPNFFLGLMRVAAWAFWRDPVKPEPPQPKRPRKPTLGYTVGDIPYELMAVVRVSWYRKGMAYEVEEYQIEESDDAEKQFRYVVGTALKQGADVCVLTQYQPEALGVQQ
Ga0181343_100015636	F009141	GAG	MPGSKSVAATTSAELDPTRMTETAMVPFYRSYLLGGKMVYLDKLSELSDSELNMLNIETMASLEEARRDYEAVENKQSEEGGSVYRRLKVAGYFQAAIKLEIQN
Ga0181343_100015637	F021513	N/A	MSMYVLSESQFDQITKALEAARFALETSQHVQLDLTKPKQTIPLLAGEKLVRTSDVQKVKSQSKTRKSSRKGQRGVAVLTEPKVLEIKRQLAAGGKTVGAIAREFGVHMTTINCIKWGKTWKHVQIQQPTPVVVAD