NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181413_1096665

Scaffold Ga0181413_1096665


Overview

Basic Information
Taxon OID3300017765 Open in IMG/M
Scaffold IDGa0181413_1096665 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)900
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC028P(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060431Metagenome133N
F093729Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0181413_10966651F093729N/ACSSDLEGDFNVNDQFKTKPFFTKKAYLEIAKAINIPFFEVYYTTEGKADNGPLERLSVRRNYPTEGVLTHITLDKWLQYLEFKVQEHIPVCKSKSYLLKRISENNEHNKNFTRRNNYVKILSSRS
Ga0181413_10966652F060431AGGAGMSKFYLADPNIITAALTDREFKIYHYLCKNYNVTKHTAYVRLVDIAGLFQLTTKEVEETLIKFCQIKVNDLPLMNIIKDKYNIYSMPSHKQFLDQIGFKQNNSFKGYKTINGFLKQRDKQEQEIIVNLIYPKLDRYELQDKLEGLPIEELKKINPKQLKYGWILKDVIKTRT

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