Scaffold Ga0181413_1015806

Overview

Basic Information

• Taxon OID: 3300017765
• Scaffold ID: Ga0181413_1015806
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2357
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057745	Metagenome	136	N
F087881	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181413_10158063	F057745	N/A	MKITTKLLDDKVHTLNVLLGRPLNPYKEDRQGNLLKGTHGQVIPCANHFMIDNSYGGVRLDKMAKGGGVDVILDRCTKRELFDQINAMIKGYQIGIA
Ga0181413_10158065	F087881	AGGAG	MSKLIQLTITFPESETQTMILEKGSEAYKQMIDYAEINEGVTSEKPHVNIIDHTKNHYLCDFRVADIVEIHTKQSLEAEYRGSNLYDITQGANEKDWNYKGEQITFSELIEKLDGPPNTYSEEARSYHGEIDHDYYMHEDGGMLIKRIW