Scaffold Ga0181413

Basic Information
Taxon OID	3300017765 Open in IMG/M
Scaffold ID	Ga0181413_1002937 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5317
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (58.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5317

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (58.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F011253	Metagenome	293	Y
F026438	Metagenome	198	N
F046315	Metagenome	151	Y
F060420	Metagenome	133	N
F065123	Metagenome	128	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181413_10029371	F065123	AGGAG	MIERSLKDAIQQFRQNIDDSDYANLGAKGKYLTVPYRIKFVRDYFGERMSIQTESTELANGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEM
Ga0181413_100293711	F011253	AGG	MNNRKSEIDKIIKDMVKNKYLPYANAITKIKKDRKGYFQAKDIKLKSKSLSTDRFQQYLKTIQEEDDTQ
Ga0181413_100293712	F060420	AGGAGG	MIPSKLTVDQLDNYFQTATYVERYMPSPLNMKNRRTEMFSLIDRLYGIGKDKDSYKGEDKPRMK
Ga0181413_10029373	F026438	N/A	MANHINVIGDSYKKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFSGGTLIHLIVQDSLTKGMKVAEVIKSEKIQNKINEYEPLDEKDKKKFEFIVKSAQETALNHLNNIAELGGQEWKDEIEQVLWTPPVKTYWLMYIDLVSKDLLGDLKNKFGNATLTKTKGWTYTNVKCPDRPFYSDVQQVSLYNKATGLKPFLSYASNCDRKLFTQENCEDLSPKNLEKALKELMIYEIAWEKKLELADGDLDTLAWLCCPDFSDIKKKSFWWTGVAQEQIDRLLKHYE
Ga0181413_10029374	F046315	N/A	MNNLLNKKFMEYSVKSSYNSEFVESYMKRKDLLPKDFKFRRTALDLLLKESNKKISDFVKDTYKENEQKNKLAQISKILNPKPNAPKYFTENDLANDLAHWFNDFCDLNTVVSANFFIGETCQINVFGSLFGNGQIDINKGKDIYKINIHPKYSNCLAVESKIGSSRGLMRLYVPKKNIDRNADNRFAIAQDKKTKIIWFGFLEPRSNGKYDILDKSYSTGKTIGQLAENINLAWSSEIKASYYPTIYNI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181413_1002937

Overview

Ecosystem & Geography

Associated Families

Sequences