Scaffold Ga0181385_1046066

Overview

Basic Information

• Taxon OID: 3300017764
• Scaffold ID: Ga0181385_1046066
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1362
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032243	Metagenome	180	Y
F040924	Metagenome	161	Y
F070308	Metagenome	123	Y
F084111	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181385_10460661	F084111	GAG	MRHDWDPNDQQNWEMNCEAERAAKVRPLRDYNGDILNPGDLVWLTNRVPKELALVLGESHRENVLVRYIRDGLDFTISDIDCEKVK
Ga0181385_10460662	F070308	GAGG	MKVGNLVKRRDPSWDTQDQLGLVISMETVEYSPKVAKVKWIGGEYPSFMYRPNDLIVVSEVK
Ga0181385_10460664	F032243	AGGAGG	MSDNYEMYGAQEGWEHPDVGDLVEIASKSSLKTEVGVVVEPNEYIKNDHLWAQVLLNNGKMKILPKRELKVIQRGGSNDEG
Ga0181385_10460665	F040924	AGGAG	MKTKMIYLTVAVEMDAEADEQEVIQDCDYFFDSPAIKNTEIQEIFNEKEMQYFKDNEPDLYGLGASRFA