Scaffold Ga0181385_1015034

Overview

Basic Information

• Taxon OID: 3300017764
• Scaffold ID: Ga0181385_1015034
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2475
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008883	Metagenome / Metatranscriptome	326	Y
F023856	Metagenome / Metatranscriptome	208	Y
F024320	Metagenome / Metatranscriptome	206	Y
F026889	Metagenome / Metatranscriptome	196	N
F073499	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181385_101503410	F026889	GGAG	MNNVIQEYLALVERTVYQSDLDAFDALEQLEEDYPELVDLVYQSAGPLAYDIQNNEVIS
Ga0181385_10150342	F073499	N/A	MTEQELEQWLRDNPWKANVIYPAGGIGFMMFVMYTCMQIIDSFLTGSLI
Ga0181385_10150345	F023856	GGAGG	MRCRACDRILEESELTRKDTHGNFLDLCSICLSATANAGVDTETMQYYQYEIFTDDEKYDTLY
Ga0181385_10150346	F024320	AGG	MTFEEYEKGYYEGDSEDPLCPLEDPKTHAMVEHLVEFETEMFRLDCRRRLKGLSSKQLQQLLEGLHGEDWTHAL
Ga0181385_10150349	F008883	GAGG	MNIGRYTIWYNHEDHVWDIYDGRKGFKYPEYTINNYSGLINKLRDRFGFLDTDRNHRRFWRVMRWWDKLRHGRR