NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181422_1179446

Scaffold Ga0181422_1179446


Overview

Basic Information
Taxon OID3300017762 Open in IMG/M
Scaffold IDGa0181422_1179446 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)644
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057681Metagenome136Y
F058444Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0181422_11794462F058444N/AMKGKNKMTLEKLLKQLNSIPKKHLKTDVRVSVDALIEKGITENFWFTDVEVREVSSGLNQPEIIINGSE
Ga0181422_11794463F057681N/AMKGKNKMLRKYNKKMFLDYASAFDYYDKMKKEMQSWSLKQFHDFYDFTHYDWESGKQLKPNEREK

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