Scaffold Ga0181422_1043701

Overview

Basic Information

• Taxon OID: 3300017762
• Scaffold ID: Ga0181422_1043701
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1446
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001740	Metagenome / Metatranscriptome	643	Y
F004520	Metagenome / Metatranscriptome	434	Y
F023317	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181422_10437011	F001740	N/A	MYNTNNPSNWSWSKAFAEMDKTVHEAEMTQQCINHVLNYPGEANGVFMSLSKSQQDDVYELLNQIL
Ga0181422_10437012	F023317	N/A	MNNLNTTIDKVAMSEFDMHYYQLGDNEKQWCHDEMVNNPKWLNPFWKQEGYQSETDKLCDKLGILNYKTI
Ga0181422_10437015	F004520	N/A	MKLTNEEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDDYMNLFNEMTIKIVKYMRSELFSPMTNEDLKQ