Scaffold Ga0181422_1015295

Overview

Basic Information

• Taxon OID: 3300017762
• Scaffold ID: Ga0181422_1015295
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2544
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004603	Metagenome	431	Y
F009521	Metagenome / Metatranscriptome	316	Y
F016204	Metagenome	249	Y
F062678	Metagenome	130	N
F105890	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181422_10152951	F004603	N/A	MIFSININGLIIDWCYNLDCQEKQYHKTWIPKLRDIQIITKDLNGLTISEVKKIILEDIQPDITMVKEHNNKLARARRMGT
Ga0181422_10152952	F105890	AGGGGG	MTILIHKTEALKLAYKVNKLTVEELWDFVDELKKLEDVANTTGQGNFNFSAVKQRITFNEFKED
Ga0181422_10152953	F062678	N/A	MGDTMTQPNQNALKKLKRKYPGLPVVGSPKDWERIEKMLSKEDLELYKLITKRGQD
Ga0181422_10152955	F016204	AGG	MNEVKDYQYVSVSNITFHLSDDEGNILENKDGTIKEFYFKGRLKPLEYLCEDMTVEDLEAVTQ
Ga0181422_10152956	F009521	AGG	MKYQIIINNGTLKGFIAFKGSCLATMQDKYQRLELQGHKLKLIRGK