Scaffold Ga0181422_1005538

Overview

Basic Information

• Taxon OID: 3300017762
• Scaffold ID: Ga0181422_1005538
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4253
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F002858	Metagenome / Metatranscriptome	525	Y
F030293	Metagenome / Metatranscriptome	186	N
F103165	Metagenome	101	N
F105072	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181422_10055381	F001655	GAGG	MNMKQPDNAHTKMFGNDGPIGNDAEIIVYYEQHGPAEPVLRIPFWYCKDELGLYENFEQSVHRTAKALKESYTYWPEGYVHVQTIINDEYVNMI
Ga0181422_100553810	F030293	AGGAG	MIVEMLDDRVSIEALGLIPHFFERALYIEGQSIQSVADKMDTLYHYGGFVYPFEGTIVDKKGRYLADNDDDPLDPIARITKLGFTLWVYPYAIVGLIDDKGNQKIARFD
Ga0181422_100553811	F103165	AGGA	MITFYMCQITGKYFEDTLIAKTAVRVADYPSESSWGIYKTYDGAAILFDCDVDHAKGELNDDS
Ga0181422_100553814	F105072	AGGAGG	MENVTNKTVFGRSIIIRKRKVLKRPFNYSQGACFHKLSGGLWSLYIEHKQSRGMGVSIDD
Ga0181422_10055382	F002858	AGGAG	MTIDQKSIYEVTGGDYSIYCFGYTQARTVTNDIIRADPWGGIPFVIRKDLEVSLDDRGNVVMPRVVLDKILFLASDELPEGEG