Scaffold Ga0181422_1002580

Overview

Basic Information

• Taxon OID: 3300017762
• Scaffold ID: Ga0181422_1002580
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6084
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032084	Metagenome	181	N
F032266	Metagenome	180	Y
F038638	Metagenome / Metatranscriptome	165	Y
F044193	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181422_100258014	F038638	AGGA	MSYEIAEYKYINHMKETYSLGGDLEYPSRTRSHQDTEGNWLLISPQGLKMAKIFKNGDII
Ga0181422_100258016	F032084	AGGAG	MRLILSEKDKHIIVTVLGDYATEIDRQATKSKEDLDTYRRIREIILQVACGNDNEEKEE
Ga0181422_100258019	F032266	AGAAG	MSDAVKGVVFIEDAINLSQDELKKKFKEAVENNEINHFEIQTRGEK
Ga0181422_10025803	F044193	AGGAG	MIIEEYQENYKNYFMFITVHHSLIEVSMHNYFDDDFEYRNKFIDYSPKEVSKILRHYIDNYEEQAIA