Scaffold Ga0181356_1078836

Overview

Basic Information

• Taxon OID: 3300017761
• Scaffold ID: Ga0181356_1078836
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1097
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007690	Metagenome	346	Y
F024555	Metagenome / Metatranscriptome	205	Y
F038242	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181356_10788361	F024555	N/A	MLTIKNIEKLYKQDVGEWRIGKVVTLDSSYLIQLYKHNRRETMQVNIERTPIGEGDTALYELWFWSDDLGGGIPIRRLLRKCDFELGPLYIIKNIENM
Ga0181356_10788362	F038242	N/A	MLTIKNIKQLELNFCHQRGLREITETQNKLGEQFYSFHFGPISDGNGYNKEIEVRLGRDINQGEYQIFVMGLHLVTRRFVTIDDVKTKDGLASEISKILAKAEHWWKNEVTK
Ga0181356_10788363	F007690	AGG	VDDIDKLNNMLTIKNILKLQNQPIWDGWEVKLIYEGNHNDTYIFELHRESAWGNGDCTIMLERTGHTHSDKVVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKENL