Scaffold Ga0181356_1034047

Overview

Basic Information

• Taxon OID: 3300017761
• Scaffold ID: Ga0181356_1034047
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1815
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016141	Metagenome / Metatranscriptome	249	Y
F024095	Metagenome / Metatranscriptome	207	Y
F048833	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181356_10340471	F024095	GGCGG	MDNTNSLPFVYVVTSTLGAAVGATGSSTLIMQADSRFELMGIFGTGGVDATTENSLQYPNSFTVSIRDQTTGRDLMSAPVPQRVLAGNAFRQFLEKRGIIFEPQSNLLFTFTNLTASVNNITLALHGYKIIL
Ga0181356_10340472	F016141	AGGA	MTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLLSAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVCQARQGFTTGTNFTYRGYTALTNGAMEQLQTVLNLGVLEISFAQKLYYQIARPFVACPSGFGIDVQSLASSRTGNAAETQVPGTNWSARSDHRASAVYNIDPIQIIEPEIQIQAAINFPNGNTPNFTNTALDTANGTQTPAIELGLIFDGYVIRPSQ
Ga0181356_10340473	F048833	N/A	PKAGSFGQTHFQLKSISTDIQIASNDVDGFTRANQATLDTRALASDFLGGFVQAGVLRFSVGARPFATIIKPFQYAPPPGSPLDYDNTYVNQISAAPVPAAGAAQVVGVPWITQTKMRSNVYFVDPNILIEAEQQFNVSLQFPSGIVPVLATNVVNDSTNPLKVGVILDGLLLRPVQ