Basic Information | |
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Taxon OID | 3300017761 Open in IMG/M |
Scaffold ID | Ga0181356_1027861 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2036 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F039137 | Metagenome | 164 | Y |
F045092 | Metagenome | 153 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181356_10278611 | F045092 | GGAGG | MADEITISLNVDVAAGNYRASFRPGTIQPDMAGFLGSDISQNITTTIMNLNVGAVGTNAGGYYWFRNLSTSTSTTFDPSIKISSCASTAAGTSFPFLNLRPGEIALGRCVTTSFSAIAATATADLQF |
Ga0181356_10278612 | F039137 | AGG | MATVYELFTSRKYVNNEGKPRAERQFVVVDAADESVVVGLFGSTLPGEYEHYPNDSGLPYDMLAFDYSITKDPSAVSTWQVTMRYRAEIGATSGFNNPTSPLLEPNEVGYRTARLSMTAEFRDLWRVYASVVALQAKAMGNYSVTDIGGSSVDVAGIPLSTLVYKQEITILITDSFLPNAQAIATQIGTRNDKVFLNYPSGTVVFAGCNCETIPEVGRNSIEYRFVYDQSYHQIQYPVRGNNGSPILAAAASGSILKGSAAQVYYKQPFKYTSNFSNLSQYFGGL |
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