Scaffold Ga0181356_1009466

Overview

Basic Information

• Taxon OID: 3300017761
• Scaffold ID: Ga0181356_1009466
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3750
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015965	Metagenome	250	Y
F024254	Metagenome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181356_10094663	F024254	AGAAGG	MIEFIPIFNHVARVARPAHTKVAIAESMEEAFQDLGLDSLDGLVMLMYFDDIYGIDDAVSKEWHPITVLELHDLVMANKTKEPASMEEVAEACK
Ga0181356_10094665	F015965	AGG	MLTDSKKKELSVEAVLMIAAQQTKSKYSAEQVYAALVKEMNMEGTSTYREGNTVFLMHHAKGRVGVFRALNADTARNYLDNSYQFIQDAYKMGFDILVSDFEDPNIMNIFKGISRNPPQEGMGYRAERTKNGFRVTVKLGPARPDRE