Scaffold Ga0181356_1004417

Overview

Basic Information

• Taxon OID: 3300017761
• Scaffold ID: Ga0181356_1004417
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5715
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009801	Metagenome	312	Y
F056314	Metagenome	137	Y
F075854	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181356_10044172	F056314	GGA	MTSRTHTPEDVKTIESKYSLNIWERALGWRKRQMIIKQLDPISNQIRNNTLEEVAKEFDGMKNGGDTTASFASYVRSMKK
Ga0181356_10044174	F075854	AGGA	MPRPKPPLPLKQRNMRMSDVEWLIFQELGGADWLRKYVRKKAKLPINHYERQLENDRMQKRVL
Ga0181356_10044175	F009801	AGG	MTECKKEYCDFIGNKAFEDDGGWSYEVWQAAQQAAFKRIATRFAGYKDIDYTGHEIARYVNYLAKQDVPE