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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017761 Open in IMG/M |
| Scaffold ID | Ga0181356_1003734 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6253 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012447 | Metagenome | 280 | Y |
| F023328 | Metagenome | 210 | N |
| F030061 | Metagenome | 186 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181356_10037343 | F030061 | AGTAGG | VPLSTLRADLKTAITSNTNYSAYDHVPEIIIPPAALILASDPYLEPMVIGNSKNYYVRLTLEVVSTTYSNPSALTNLEDDIETILGLIPTNYIVLSVSSPRIRSTNSTDLLTAEIQLQTAYTG |
| Ga0181356_10037346 | F012447 | AGGA | MAKAIQLVKVDKDYNGLLRAFNKMDDIAKKDMQEIASKLAERGANYAKGAANNAPYNVKQARAVAESIVIKAKDKAPSFSIGGKRLVGSSAFSAGYVIMGNEFGSKQYKQFPRRSGRGGKEGWWLYRAMSRFQPTIAQEWLKGYERIRDVWKGSL |
| Ga0181356_10037348 | F023328 | N/A | MTVYTPTYRVTIAGVVQTSTTLQDGTITYGRNDFFEATQPSYCNIELLNLDGTSPVVELLDTVLIEVTDSTAAYIKLFTGEVSGVYNRFEGAGLGGKPNTLQIQAIGALGLLVKRYAGGVAYPEELDGARIQRILEETLFVAWEDISNTFTWNDFTTETWANYGVQGIDTIDAGRYEMLARSAQVQQAYELTDITQQSGLGYLYDTADFEIGYADAERRSENYTTNLIELDADLVNADIQTRLQTADIVNSVVIQYDDPVLEVVAQNDTSINNYGLLEEIRSTILAETVDATEQATNFVNYRGTPKTSLEAVSVNLAHSDMTNTVRDDLLAVTMDSLLYLDNIPVGLIPEGYFEGFVEGWTWTLGRKNLELTMSVSNSIYS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |