NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181356_1001848

Scaffold Ga0181356_1001848


Overview

Basic Information
Taxon OID3300017761 Open in IMG/M
Scaffold IDGa0181356_1001848 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9067
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002045Metagenome / Metatranscriptome599Y
F032658Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0181356_10018482F002045N/AMEFYCVYVKTRKKLDKYVKVNRIKNKYIVDIKKILEEEEIDFDKDRTYLKILVNQKIQIAIEKNKDIYYVPDFEHDFSIEKLLNIKRLLGEENNFNILIFFNDFRKENELLDDVFTNLSKFTNSKIIRDY
Ga0181356_10018483F032658N/AMKIIKFENWNRVFEEEEAAPRLPKNLDYWTKRGKIGKDVALYTHDDMDGIFSAIEVKKYLLNAGFKIVKYGVLNYSEGWKYTSLDPKLINVVVDFANMPGDERDNMIDFYLDHHGSFTEEQIKKYMNSPVQKKKTASAYEAICQSLGVPQDSLTLSVIDMIDAAKYQDYGVDWSRLLDFNISDIKKSENKRLEFAAAFNQFLKRSDTKTLIGVIDNCKDASIYSIFNAMKILYPEHNTDRVGNPKQFMDDSTWRLGEMQKRTKGRGGKKVYNSQEEFLSVFQKGGLIQLDGYQLIGDLAFIPTGTWANALRARTIIQNEFKAGKISKEPKFILLQYGGTLQVCSYKKMDEYGDELPKLKSGEVVNDLGAYMTGLLTNFKQHLGYHNPDTSLGQDEITVSGGHGGIGSISNIFDECKISPYRGQRFIDMFKNKIISDLSGVPFNLNLKWSEPKEFKSKDPEMDNKVIDADEVSKIGRSGKILRFGGLEEK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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