NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181414_1024270

Scaffold Ga0181414_1024270


Overview

Basic Information
Taxon OID3300017759 Open in IMG/M
Scaffold IDGa0181414_1024270 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1653
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006892Metagenome362Y
F058519Metagenome135N
F065123Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0181414_10242701F065123AGGAGMKERTLRDAIQQFRNNIVDSDYAKLGAKGNYLTVGYRIRFVRDYFGERMSIQTDSTELANGSHKFRANIYIDDKLVSVGESKQMKNSDKEFEKQQSVSIGRSLSILGFMGDEIATAEEMEDFLKPQKKIVKDKTFENGHKVNYPKDEPEVKTKQTTEQMANEWIKVL
Ga0181414_10242702F006892GGAGGMSDTGIIIPLKERIRDLETINEAHQKKNGQLRQEIQDKDKLIKELQEKIKNPLNKMREQGEI
Ga0181414_10242703F058519N/AMANHLKIIGEAYQKFNDTNTSVSANKEPHSLRAFKRYKLNSEQRNKCTNASLTLGTLGHDISEKAIVKNLSIEECIADKEIQDKIKSYVTVDIKDQMKFEFGIKFLKDICQNHIENIKELPKQKWQTEIEHVKWIDPINVPFRMFIDLTGDTHINDLKNKFPTVKYAPLKTKQTKENPNRIGDWTCSHPKIDQRAFTGDLMQIALYSHTTGLKPSLSYASATDRILFTEKNCEELQPENLKRNLQELIAYEIAWEKKLKAANGSVDELLWLNIPDFSEIRKGSFWWNSIPQEYMEDYLKTYV

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.