Scaffold Ga0181409_1024676

Overview

Basic Information

• Taxon OID: 3300017758
• Scaffold ID: Ga0181409_1024676
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1928
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022393	Metagenome / Metatranscriptome	214	Y
F027837	Metagenome / Metatranscriptome	193	Y
F058514	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181409_10246762	F022393	GAGG	MMDDLHNNIYVRHGMTKISICQHWDTPSDRINGTAAMQEVGIIPDDDDWGNMHIKKYYASLDSLIEVLEGIRDEIDQKKYSQSSCQGDARTAQASASSAT
Ga0181409_10246763	F027837	AGGAG	MRYEMQNFVKFASTKKVSNVGQKPKRDEHKRLRKIARKNKSLTRKLTN
Ga0181409_10246767	F058514	GAGG	MIVNGYEIVIEIDGVKSLINLDDLYPSIKDWHSAADFAMKMAREANPDAVCIDFLECGEYELEG