Scaffold Ga0181420_1012528

Overview

Basic Information

• Taxon OID: 3300017757
• Scaffold ID: Ga0181420_1012528
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2871
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003230	Metagenome	499	Y
F006446	Metagenome / Metatranscriptome	373	N
F056070	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181420_10125284	F006446	GGA	VLVRDLQQILGQFTDKFNKGMGKVEGKGNAIMYARVYVDTGNNRLSEIQKIEAHENTLIGAKEGIRVVLKMVPQNKTKIIL
Ga0181420_10125285	F003230	N/A	MKDEKTVIDFKKAKDDRGINDLERTIDKLRNNLRDLINMNDQYKKLLADQADKIIKLEKENKDLKEERSDYYGAS
Ga0181420_10125288	F056070	N/A	MCSKQGKIKAKNVDTQGVGEVSGGCRKTHLGVAKVVQFRIILSYLRQMCTKFMKMSTPPTPCRHPAHTPPVELLFVNKRWYKPVIGDRYGLFTKADTLLDFSANFKKKIKILCKVSTIRNVAEL