Scaffold Ga0181420_1012506

Overview

Basic Information

• Taxon OID: 3300017757
• Scaffold ID: Ga0181420_1012506
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2874
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F005038	Metagenome / Metatranscriptome	414	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181420_10125062	F005038	GAGG	MKAKNINIYDLFSATYKKRKMFSFMGFGELSIMLKVDKPIRQISNVYQFPIKQYYNQKRRIK
Ga0181420_10125066	F004629	AGGA	MIPTKLTVDQLDNYFQTATYVERFMPSPLSIKNKRTEMFYIIDKLYGIGKDKDSYKNEDKPRLKIRLNGEQIQIYEFCILLLVKANEKDRDIISLRNFPYKRSFRILRRFFMPNSYEKVRQDYYNALYELLKLYHSKGRAYFLK
Ga0181420_10125069	F004990	N/A	MELDDFYDIKKPCCICKKGADLRENNKYYCCDHYSLYVLGKPMSQIEKELEE