Scaffold Ga0181382_1029366

Overview

Basic Information

• Taxon OID: 3300017756
• Scaffold ID: Ga0181382_1029366
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1672
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010318	Metagenome / Metatranscriptome	305	Y
F010532	Metagenome	302	N
F042853	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181382_10293662	F042853	AGGAGG	MSKEGTYLIEIERHYIATIEVDAEREGEAIRYAYSEENQHIANRNEDYFHNFQEFEHEAKVVRFKSYEEQYPDED
Ga0181382_10293665	F010318	AGGAGG	MNVDSDKPRYIECIYEAPITFDLEELGIDWENVKDYYIKYGTLYVDFKDGTSESYYNGDVGETDYKWAVRESILTEDYDLVEGLN
Ga0181382_10293667	F010532	GAG	MNRTLYKKLEDICAREYILNKLSSSKFRTFVDFLYDDIRTWDEPMNVSEVDIIHRIEEHMSYMVSSYLTKPYEGIGMEQE