Scaffold Ga0181382_1023740

Overview

Basic Information

• Taxon OID: 3300017756
• Scaffold ID: Ga0181382_1023740
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1906
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004376	Metagenome / Metatranscriptome	441	Y
F008386	Metagenome	334	Y
F075988	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181382_10237404	F075988	GAGG	MTNKLSQWLIDYVKKKNGVDLTNVPSDKSWTELNPFRDSTMLSDNVIEFINEKNLSGIKSSMDLVEEQSDKAAKEQRELNTIKGDK
Ga0181382_10237405	F004376	AGGGGG	MKCLDCGCDEGTLLKEFQEQPNKNWSWYELSEMTAVCVSCGSENIKEDK
Ga0181382_10237407	F008386	GGGGG	MSSEKQLILIILTAVVVFAYQYYKDEKKKHDEKLQRHLSKYFDRK