Scaffold Ga0181382_1023582

Overview

Basic Information

• Taxon OID: 3300017756
• Scaffold ID: Ga0181382_1023582
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1913
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024203	Metagenome	207	N
F066583	Metagenome / Metatranscriptome	126	N
F096075	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181382_10235821	F024203	N/A	NELVSKWQREMTDTEQYHAQAIDMLEDRIAKLEDKHKAVTKQNEVLMELLSKLIRGKNE
Ga0181382_10235824	F096075	GAG	MMKYHSKAYYSTQEATELMFGDTPSNRKRLLRLLQNGEVKGKKFGKRWFVYASEINGENNEVQQGWN
Ga0181382_10235825	F066583	GGAG	MKYNKAGTDFENCYVCGAKLKEVTHKRNIQRRCKSCIYHGVGEMKPVVEESQQEEEEDWSVLDDPRAVNEKDYGRVFREPTRVYTGHSSLSELVGGSSNYNHKHGPLTDGVRYTNRKKKE