Scaffold Ga0181382_1013375

Overview

Basic Information

• Taxon OID: 3300017756
• Scaffold ID: Ga0181382_1013375
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2717
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028551	Metagenome	191	Y
F029569	Metagenome / Metatranscriptome	188	Y
F077927	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181382_10133752	F077927	N/A	VEDHLKRLRIKEMTKYYNPNAINTLQMQFGSLVIKIKEIEEIQKTYVYPKRIDKRTKKYGNQRKHKGEMGKYN
Ga0181382_10133754	F029569	N/A	MNKLLLLSLLLLASCYSNKEHEEQTDFKTNLDSLFEAADGAVELVTNNRKQKVLLEQDLWRKKRDIKEIKKIYSDSIWNLSNMYELNTLKIDSDSVQYNYKIVLREIVDTVRMVVTDTICDVCQTRQNKKENRWYKKTFRWIKKTI
Ga0181382_10133757	F028551	N/A	MITYKWIISSMDCVIQETVEGVELKNVVNQIHWRRSASEGTEGQADYYYADVYGAMPLTSPNPNDFVLYENLTEADVDAWLNEMTEPTPAEMDVQLAANIELQKNPTEETLPLPWNNE