Scaffold Ga0181411_1039379

Overview

Basic Information

• Taxon OID: 3300017755
• Scaffold ID: Ga0181411_1039379
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1480
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015990	Metagenome	250	N
F083372	Metagenome	113	N
F087206	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181411_10393793	F083372	AGG	MKKYKLITYAMAEYAYASHLRDNLKHEGEIIYPHEASSKLLQDGSWLLLTITGERLGTVSPNGTVRLKXSERTYQNIYDI
Ga0181411_10393794	F087206	AGGA	MSNHYNEQHNEQELENIQSYVLEQDRKGLLEKHITDMVITYGLHPDDDRDAILEHIAESIFYEQTIGDLV
Ga0181411_10393795	F015990	GGAG	MGKGSGRRIEDINKIRNNWDSIFKKRDKKQITKVTIEFEMPGHPSIDEMRNYVEKLHKEDKLVFLTITTNAXTNY