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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017755 Open in IMG/M |
| Scaffold ID | Ga0181411_1019320 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2219 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F033250 | Metagenome | 178 | N |
| F045425 | Metagenome | 153 | N |
| F070658 | Metagenome | 123 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181411_10193202 | F033250 | GGAGG | MDVKLASTRQLSPVFESGGRLDLDVLRPVLEQHAASMVEDARDGWPVDTGISRDAWQAEIDVSPTELFVSLINEARQRGRGYAVYIHRARSRRLVYTEVQERLTLNLIPALQADIAVTLAESMRG |
| Ga0181411_10193203 | F070658 | GAG | MSVDLDIELRSVTRHLKRKHGEMRVLSAGEFIVLLAGAQDVLVQLRQGWPVVTGRSRAGWDVQAIQTPFIGYRVSNGVDYSQWVHRAGEGEDGPLWEQQLLIIRDRILPPIVERLNMTITETERYSQPAQQEPQRSLFLATPQQQTASVFSQVRRLRRLVRRR |
| Ga0181411_10193205 | F045425 | N/A | DAVSASESGGTLSYTVTAATTSGKTLGQGFLLKFTATIGGDAHDFYNDAALTLARLYPPIGTTDLTNRYSRLAALQTTGASDLQKFVSDAWTELSSRLYAEALPFWRMRTPSALRPWLTAQALVYALDDLALTLGDGGPYRDEARRLEQTLPRLYGQIRSRMDDGEDNTIGEQQQPASPVLVLSSGRLGRFTR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |