Scaffold Ga0181411_1018717

Overview

Basic Information

• Taxon OID: 3300017755
• Scaffold ID: Ga0181411_1018717
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2258
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F005591	Metagenome / Metatranscriptome	395	Y
F010878	Metagenome / Metatranscriptome	298	Y
F015812	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181411_10187172	F010878	AGGAG	MKIIAWHIGIVWEDGTEEFLADIPDWVATRVDEFLNELEEEDDE
Ga0181411_10187174	F015812	AGGAG	MNKTLYKRLEDICAREYVINKLTKDKFRTFVDFLYDDIRTWDNPTEVSDNDVMYRIEEHLSHMVARIPTNTHTGTTHD
Ga0181411_10187176	F003051	N/A	MKTKILKSKVTIDMSVSEYDTLFKYINKLESMLNTLHETNDLWLSDVHNLSSLRWELTKLLDAEWNQDTYRYVKRGSK
Ga0181411_10187178	F005591	AGG	MNLYFKSTTLDKQIGWTWKDMDKAYWDTWIPKKSDIKIITRLNKEQKKQALDELWEDLQSAIQFTRDRNNARRR