NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181411_1000704

Scaffold Ga0181411_1000704


Overview

Basic Information
Taxon OID3300017755 Open in IMG/M
Scaffold IDGa0181411_1000704 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12326
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (88.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015477Metagenome / Metatranscriptome254Y
F025294Metagenome / Metatranscriptome202Y
F052627Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0181411_100070415F025294AGGAGMEASNDTAVQPETQVDPVTDTATPVSAEQSAPTETKSEKTTPSVEIRDGKTYVNGIRQYSRDDVNKISANAKHEVERNILNDLNVDSIDQVKTVVSTLQEVNPQEGEGLNVESLRDAVKKREATVEELKSQVNSLKTDLMLKDHMGELQNAMPTNWTPEQKKSVVTLMKAEGMLAVEGDTFAIRNGNDFLTTDGETPDYAKAVEIVGKEKLGLAFGKKGVDLQYGETSMTDTGSGPKPLNVDKVNTDADYRSAYIRLRQYQPNLAKSKITDAMVKKEMNK
Ga0181411_100070418F052627GGTGGMSIRSDLITQITTNLSGHSNTISISQELPFNSGGTPLYEKNPNVLYVDEQQIAVEQLYRTLDQGNVNTTTTTVNAYLSTDAKNQFADINTVVSNLLIARNAITNVAESTSDYETEIEDDKITYTFEYNFTTI
Ga0181411_100070421F015477AGGAGMEMEIAKAQNEVKCARADVEKASNRLAFVSSAIHNLKDRLQDDIEL
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