NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1055394

Scaffold Ga0181344_1055394


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1055394 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1179
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011152Metagenome294Y
F028163Metagenome192N
F086820Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0181344_10553943F011152N/AMTISAADEWAIHKRAVDVVFSYSGQLGTTIHYNSKLNNHEQVTEYAESLGAEMIVARYFGLDYDINLSNGKRGADVGQGLEVRWTSYVGGNLIVYPNDRETDIAVLVVGKSPVYHIAGWLPVAFARRKRFKNPRQDSWWVDQANLNPIETLVRSEYATAAI
Ga0181344_10553944F028163GGAGGMSRVTEMIDVDLMIGRTLIDGKIVAEFKCEQCDYCQRIEILDRAGYQRDVSGEPILWFCGQCRK
Ga0181344_10553945F086820N/ADTIKKTLGGVQVAAAPLCSHGHMIWREGTSAKTNKGWGGYMCSEKVKAKQCPPAWYMLGSDGQWRPQV

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