Scaffold Ga0181344_1029078

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1029078
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1693
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F070109	Metagenome / Metatranscriptome	123	Y
F077297	Metagenome / Metatranscriptome	117	Y
F084221	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_10290781	F070109	N/A	VKDTLVSLTTNEVRALLKLKAERDYLLEQNTLLTKSDKIASSVIKDQAKTIDAWAITNEKTSQDLVKAQEQLYKETARKESWRSAALIGIPISFVGGIIFNLLF
Ga0181344_10290782	F077297	N/A	MTHQTKEQIKLAVVFTSAVFTCIVMQLMYIRIKEDEKALQGYERRADRATHVIDSLEATNVQRMLEIEELNQQLERNTERYEANISAIDSLDRNGLKRAMHNLLTSLTGERYAGESND
Ga0181344_10290783	F047677	GAG	MKWLKSVFSNEGDASSKRVASILALLVCINLSYIGTFTEYKTPEYMFDGLLILAGGGLGLTVIESIFDKKKSNDTPNEGTN
Ga0181344_10290785	F084221	N/A	MSNHQQQVAEGITGTVSSILLSIPAWMLDVEFALKIFCLLLSAAASIFTIYKMRKSKR