 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017754 Open in IMG/M |
| Scaffold ID | Ga0181344_1014542 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2491 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.2382 | Long. (o) | -86.2805 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F024730 | Metagenome / Metatranscriptome | 204 | Y |
| F030677 | Metagenome | 184 | Y |
| F048156 | Metagenome / Metatranscriptome | 148 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181344_10145421 | F048156 | N/A | MNLLSTILDRLNQRIEVGNIFDKIYGLSELVGEGNDKAWAYYIGNGQAVPVTDFDAKQGTLFWAKRGKITVAKNDSLRLAGCKSIYETKFSMTAYAMVRKSHLPCDSADAQDWVASRVLRLISGTDPQFKTAIGVIAYEVVPN |
| Ga0181344_10145422 | F030677 | N/A | MATPAEIQKNLDILYEGWLSKFTPLYVAVRELKRIMFKRIFGTGSSGGTNTAGEKLPTKPYSTTPIYVSPRALASAPSRYKVGKRGEPIESLYFPGGYAELKKGTSRKLPLELTGKLKGGFLTSEVITEGLEAAITVPASELGKIEGLETKYGTIFLPTKEEQEAMLEEHAQLLVEQIINAMKKS |
| Ga0181344_10145423 | F024730 | N/A | MCIESLLGLRGCESPEPSTGLYIDDLGINQTFLGQLITDQYNNGVELFEDKRAFAWRKISSDVLTKLSPMMKSDTVIENKRVGQVVSNYSNVQTALGAGNYGGIRLKIDPNTVSYLNFYLADINLAIASSNVNVPVLIFDMTTGKLIESLTYAEGALDQFIGKTLTSAKRKLDIAIVYQSTMNTVKFTPKRGTCTSCGGSPKESHICPFVDAIGIELTTDGTNVLTSSSSKYTTGMSLTYSINCDRQGWMCSIGGLMALPLAYATAVEIYNYALTVSPNQRVNTTVIVNRGQNKAELMDGIMAARDIAATRYGEELGAMLQNMRLPDDTHCWDCRRNMKYVTALP |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |