Scaffold Ga0181344_1008142

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1008142
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3435
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019635	Metagenome / Metatranscriptome	228	Y
F022865	Metagenome / Metatranscriptome	212	Y
F081253	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100814210	F081253	AGGGGG	VSLIQTPEQLADAIRNDPQRVAECLHRINRFGGQAVGCSVLQHSLAVYDRLAGWPANVRLWALLHDCHEILTGDVVRPYADEWLTYQQREIDYQLRKDLGITLIRDDAIAVRAADMDAGNYEFAQVTAGRRSYHHEMPVPDWVDSVRALLSEVAK
Ga0181344_10081425	F022865	AGG	MKKSKTETKKPMGRPRKHSTSAITCVVKLPPEVVRWIDARYTTRQEGLAAIVSEYYEPGV
Ga0181344_10081426	F019635	GGGGG	MAQIRIYIDGDTEQPTPTPEPATDLQSEIDRINRTLSDVMRRIAKIESDVRGLRMRLSDQDAEGQVP