Scaffold Ga0181344_1007069

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1007069
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3703
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034068	Metagenome / Metatranscriptome	175	Y
F047485	Metagenome	149	N
F055720	Metagenome / Metatranscriptome	138	N
F083678	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100706910	F047485	AGGAG	MQGLDAHYSALWVANERRIAEQGKTEKYTIRIAVEGFVEIDVDATSRSNAVEQAMEKFNEANLGIAITDKSIEDVEKWK
Ga0181344_100706911	F055720	AGGAG	MNTTLILNTNASGSTFTLDVDLRYTSKTFPALSRIQRALDKFLTNNSHWLAEDNPQIVALVQSDTKLNVRYASGLSLTKIDPLYV
Ga0181344_10070694	F034068	AGGAG	MQIKTVNRDEKEIDYDRLYKAYESLIEWVGTNDVDGQETLGLLIKAAVSLTVTNNRPKHELLEVVSVTYDIERSVRPRADEVH
Ga0181344_10070695	F083678	GGAG	MFKHITAHPWSVGRRGIQTTSTVWGYENEYGIPLVAECYSKNTPTITQRANARLISIAPQMYEIIQKMQSDEAKALVRYMEKEIDHAD