Scaffold Ga0181344_1006814

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1006814
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3777
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030692	Metagenome	184	N
F061577	Metagenome	131	N
F062704	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100681411	F061577	N/A	MPRPKTEMTKSGKTIAVRATLSEWNEFKRLGGTKWLRQFLADSIEKHQQTKETK
Ga0181344_10068145	F062704	GAGG	MTNAQALTQALILAITAPDDFKASKAIQLSEELAMRLNSAEVEQCKADALLILEMA
Ga0181344_10068146	F030692	GGAGG	MSEVDEKKGVVVKFDPVEYEALRAIGDGNLSEGFRVCLRWAVHFHSIGLRSDDNLEYIGLCTVAD