Scaffold Ga0181344_1003664

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1003664
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5314
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002653	Metagenome	539	Y
F021263	Metagenome	219	Y
F078246	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100366412	F021263	GGAGG	MDEETREMDLQLADLLQENKRLKHIEQAAHAVMKAFGNSIDYNTWDKALDTLEAVLKEK
Ga0181344_10036645	F002653	GGAG	MGYFEPDYSMTEEELERRVEAMSDEEQHHFRLLIHKIVMCYGQGKAQGVFIIGRAEDNVAGVVTLNCNEMEASQLMLAANDFFGFLNVLDAPPKENFN
Ga0181344_10036648	F078246	AGGAG	MPRPKPPEPLLGRQVRMSDRQWMIFNQLGGAEWLRGLLEKKAPMPKKYYDRELERLQNPADAIFLQRRKGEVND