Scaffold Ga0181344_1002032

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1002032
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7270
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025263	Metagenome / Metatranscriptome	202	Y
F099215	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_10020326	F025263	AGGGGG	MTINPNQLQVAKIYPGNYTNVLRYWHDPKSVPNISANDTAETLTNQPVGGPVGVVIQPGWIAQQAIGYVDLSYQANGSVNQLEYYTQPYGSGLNGSNQAFISANVIIPSPDYHKDVRADIADGITVPSGALVYRASLRVDGGDVISSGVGGGSATPQLSLTPAVSQGIRNDGTVVSGQFAVSVTGANSRIANGSVNSVNIFNSTNLSRLSAYTTWRLVATRNLGGVVASGLAQASGTFDPRAQAGKLSGKNKALAICELCWIVPDAPPKRDDVVLQPAGVVESSIYTSTVPA
Ga0181344_10020328	F099215	N/A	VGYIPLSNYKYATGLHRIQSGPVSEGFIVLSSGIQDIGADLGIVAPGPMTSGVYSTTAWRSVPPAVSGYWTDFQDSDYQASGVLSVYNGYRALSVTTIANAKVQTSLGPEFGIRDAGKYTYFGGSAPDNQDYTPYNTPEGNTAAQGKTGGGVTHGRYEGGLLTNSLGSQGTANRAEWVYNPPVYCKTYTETIRSTAPGLMSAALRYIYRGGAARYVSNYGSIYLQGSEGVRNLVRTFSPSVNSSNQKSI