NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1001901

Scaffold Ga0181344_1001901


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1001901 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7537
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.53%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001775Metagenome / Metatranscriptome636Y
F008081Metagenome / Metatranscriptome339Y
F036704Metagenome169Y
F047062Metagenome150Y
F093880Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0181344_100190117F093880GGTGGMEAKDIQKMNDLNRDIWGMIVQAQQTKNWALMEVNLKRLYSLQKKYINLINIMDYEVKGTTLMLQDEVRIRNQFEKQWFKDVAERNHAYQEMKENIDKHFAE
Ga0181344_10019012F001775N/AMKELLDDERIRIAILSFLIGVILAFVIYPRPEIETIYKTETKVETDTIYSHVVDTIYIPKTKIKTEVIRDTILIDYKPKIRAFQTSFPSAYGSTKVSGEVLGEVLKMTSTNDFKIPVVTNTITETKTETKVIKPKGIYLGAGINSVLQPSAKVSYLDNKYLFEYQFQPLQGVHQVGVSKKIF
Ga0181344_10019013F036704N/AMWIEIEIMLSGQTIDWKSLGLEVQHEWSRRMVRIGDIQYVQELMHDIQIISFYDNTSCLIRGNYKEIRDEILHLDQEGQLD
Ga0181344_10019015F008081N/AMEEIEILNPFGFGRASKVIDENRKPADWWVDYIQFNEVVSENEFYILFADGFLIKKGRSKFQSSQYLKGDRFKSFKECHESQI
Ga0181344_10019017F047062N/AMNYETENFYDQEIEFIYEGKEYLWTGDYTIEHIGEDESEYAPAYGEMEICIDHTSSLICYEQGKEVIPTRSMIMALEIEIERNY
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