NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1001687

Scaffold Ga0181344_1001687


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1001687 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8031
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004694Metagenome / Metatranscriptome427Y
F101057Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0181344_100168713F101057N/ATTHRQRTVGGTAVALVDWTLNANTTHVFVQFTGANARVTLDGVTNPTTTLGFQYPDGSTAYWTRSLALSAKAIQDDATAVVCEIQELNFL
Ga0181344_10016878F004694N/AMNTLIAITPVTIWTSTGTKTAVNFGVRYVNYQNGPAVADTVLLAADGSEVATQLVQATQEQTDAWTDDATFYGILAENAGLTLAPAAP

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