Scaffold Ga0181344_1001408

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1001408
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8791
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003065	Metagenome	509	Y
F009801	Metagenome	312	Y
F070880	Metagenome	122	N
F091450	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_10014083	F009801	GAG	MNECKQEYCDFVGSKAFEDDGGWSYEVWQAAQQAAFKRLAERFRSYGNIDYTGKEIAHYIDFVSKQDVPK
Ga0181344_10014085	F070880	N/A	MPLIGRQVRMSDLEWLMFQELGGADWLRKFVKTKAKFPTAYYMLKLKEEDDSKSR
Ga0181344_10014087	F003065	AGGA	MSEQTLNVWERALGWRKRQMIIKQLDPVTNQIRNNTLEEVAKEFEAMKNGGDTTASFAAYVRSMKK
Ga0181344_10014088	F091450	N/A	DCAHHECLHAMKSKAILEFDYPDDETELLFALKGADMYATLANIKLTITREFKHKADMEAALLRVRELTDEMLNKLDH