Scaffold Ga0181344_1001282

Overview

Basic Information

• Taxon OID: 3300017754
• Scaffold ID: Ga0181344_1001282
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9327
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006255	Metagenome	377	Y
F046243	Metagenome	151	Y
F086796	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100128213	F086796	N/A	MTDYSENYLRIQQLMKKYYNATLKCNYELATKVAHDLADETIKLEIASVRALKDQWLRS
Ga0181344_10012822	F006255	GGA	MSELNQLMLEHEEFLESALDDMEYGGELSQEQVDCIRQACGKPKKRNSHVDPLLQDVINSFGNIFGNPLASFPTIRGDK
Ga0181344_100128224	F046243	AGGA	MKHMTRYYKPEDAMLRPHKETTLEKQQKKRQDHNPPLELDDSNILNRKANQRMKRKQALMDAMNKNHDPDIVG