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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017754 Open in IMG/M |
| Scaffold ID | Ga0181344_1000832 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11888 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (84.62%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.2382 | Long. (o) | -86.2805 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001059 | Metagenome / Metatranscriptome | 790 | Y |
| F004695 | Metagenome | 427 | Y |
| F005087 | Metagenome / Metatranscriptome | 412 | Y |
| F027490 | Metagenome / Metatranscriptome | 194 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181344_100083212 | F005087 | AGGA | MAFFIQSGNALVSRVAQWVGAIPSSISINATAFNSSTGVITTSASAVSSVMVGDFIGCSGMGPYTTVLAVSSTTITVSDPDEIWANVTLPTAILKLPTQSSSEILSCIQLCELKMRTIELPALRTDPYGNTPTVLTTDAQGMAPIPADMNKPILFFQETPNSQVAPGTPAASMGPWIIYDRVGDREIIRRRMIDQLYVRPFGVPRVIRASFSEVGGNYVFTPNPGENVEIKAYYQRTFPFLFGPTGDALSPIVQNNATLASFPEGYMYGTLWAYYDKNKNNEEAQKWNARYEDSYGLIEDQNFKGKWLGGDQHLTSEFQPRNYRYSFK |
| Ga0181344_10008322 | F027490 | GAG | MSYGTVINGGAQMRKGVTKGINDKLSTRSAEDDRRAVVAGAVNSAYKVNTISSQHTNNSNKGQFTKPSNRSKDYAA |
| Ga0181344_10008324 | F001059 | AGGA | MATYDIDALKVDLPSAKELAQFVYDKTDGLISLDLIGKPKEEQYIVAKNALEGKKVPSEYMTGFNPYVEKKDTIPEDPLRKMPKRSIDLPDEDSQIHYFGATNMPHPLDPQSDKKVYIDFRKYENGLITYQIVGPIEKVPFGEKLNKYGQTVPEKYTWIDPRTEERVLRNPDGTFTKEGRGVHTFLIGEKGGGVWNMIDKDVVSISSKNIADPWA |
| Ga0181344_10008327 | F004695 | AGGA | MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEADGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRSPVTQYKEVEGTRDQLRVFETLAGDKGLTAKRQNMRKIDVDLQGAMQEAMAPDESEAMQEPTGDELQEALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTISTIQDQDFVGFYDPMTIHECKTQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDNDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMSRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLVQYSDDYNIQQLAATCLKGQEFLDAKSIENFEFIDRRMINIDLALGFLSEENRLTRQQMILQAQQQFGQAMMMIPQEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMDEAVKIMQAQAAKGPSAEQQETQSKVALNKAKVEESGSVTALNIRKAQDIDTDDMFEALAAKRGKLSSVQVD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |